PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC20115_p2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ARF
Protein Properties Length: 299aa    MW: 33575.9 Da    PI: 9.741
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC20115_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.81.8e-2225133199
                  EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E....EEEEE-SS.S CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf....vvFkldgr.s 88 
                  f+k+lt sd++++g +++p++ ae++      ++++ s++l  +d++g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD     +vF+l+ r +
  RrC20115_p2  25 FCKTLTASDTSTHGGFSVPRRAAEDCfppldYSQPRPSQELLARDLHGLEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAgfcdIVFSLIYRgD 122
                  99****************************955566778********************************************8777789**99777* PP

                  EE..EEEEE-S CS
           B3  89 efelvvkvfrk 99 
                  +++l+++v+r+
  RrC20115_p2 123 DGKLRLGVRRA 133
                  ********996 PP

2Auxin_resp63.86.5e-22160248182
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvek....alkvkvsvG....mRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                  +ah++st+++F+++YnP+ s+s+F+v+++k++k    +lk++++ G    m   ++f + + s+++ +G+++g+sdldp+rWp+SkWr+L
  RrC20115_p2 160 VAHSISTNTAFNIYYNPKGSWSNFIVPAKKFLKipglSLKMPLTEGlyssMLQHLSFFSPNLSKIS-AGIITGISDLDPIRWPGSKWRCL 248
                  799****************************99777788999999833334455567788888888.9*********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.59E-3914134IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.0E-3518144IPR015300DNA-binding pseudobarrel domain
CDDcd100173.19E-2123132No hitNo description
PROSITE profilePS5086312.15325134IPR003340B3 DNA binding domain
SMARTSM010191.8E-1725134IPR003340B3 DNA binding domain
PfamPF023621.4E-2025133IPR003340B3 DNA binding domain
PfamPF065075.0E-17160248IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MIDVDGGDQE DYEVLKRSNT PPHMFCKTLT ASDTSTHGGF SVPRRAAEDC FPPLDYSQPR  60
PSQELLARDL HGLEWRFRHI YRGQPRRHLL TTGWSAFVNK KKLVSGDAGF CDIVFSLIYR  120
GDDGKLRLGV RRAAHIEGAS AFSTQHNQSM NHHNNNFSQV AHSISTNTAF NIYYNPKGSW  180
SNFIVPAKKF LKIPGLSLKM PLTEGLYSSM LQHLSFFSPN LSKISAGIIT GISDLDPIRW  240
PGSKWRCLLV RWDDNEANRH QQRVSPWEIE PSGSVSNSGS FITTGPKRSR IGFSDIPVS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A5e-7111278144396Auxin response factor 5
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN9794631e-147JN979463.1 Brassica rapa subsp. pekinensis auxin response factor 3-2 (ARF3-2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006410539.11e-159hypothetical protein EUTSA_v10016394mg
SwissprotO236611e-154ARFC_ARATH; Auxin response factor 3
TrEMBLV4MA801e-159V4MA80_EUTSA; Auxin response factor
STRINGAT2G33860.11e-152(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49242849
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33860.11e-143ARF family protein